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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.QW16A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 557aa MW: 62787.5 Da PI: 6.2155 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.7 | 1.2e-14 | 403 | 449 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f +Lr+++P+ +K +K++iL A+eY+++L+ Aradu.QW16A 403 NHVLSERRRRAKLNERFLTLRSMVPSI-----TKDDKVSILDDAIEYLRKLE 449 78999*********************7.....6****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.8E-46 | 7 | 183 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 399 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-18 | 402 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.06E-14 | 402 | 453 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-18 | 403 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-12 | 403 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-14 | 405 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MLTENFKEQL ALSVRSIQWS YAIFWSTSST QPGVLSWGEG YYNGDIKTRK TSQGVELNSD 60 QIGLQRSEQL RELYKSLKTV EASPQTKRPS AALSPEDLTD TEWYYLVCMS FVFNIGQGLP 120 GKALAKGEPI WLCDAPSSDC RDFSRCLLAK TVVCFPFMDG VIELGTTDYA KDLSLIQQIR 180 TSFLDILDVG VHNVHGAFNA KQSQEVGGAL ISITSPNNSS NAFQANQPPD ETFMVERINN 240 GTSQVQSWQI MDDELSNAVH NSSDCVSQTL HSPENVASLP KGENLTDSAK DLQKCNNSKM 300 TLVDPRSDDW HYQMVLSTLL KSSDQLIMGM HFQNFHQESS FTSWKKAGSV SYQRPRTGGS 360 SQALLKKVLF EVPRMHLDGI LEYQEENDFK EAVRTEADEN GMNHVLSERR RRAKLNERFL 420 TLRSMVPSIT KDDKVSILDD AIEYLRKLEK RIKELEAHKD LTDREARTKR SPQDMVERTS 480 DNYFNKTDNG NKSMAKKRKS RDIDDTRPEI NSESLLKGSS TNDVAVNINE NNEVLTGPTI 540 VSAKRIKQTL QNVAFKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-13 | 19 | 168 | 24 | 176 | Transcription factor MYC3 |
4rqw_B | 4e-13 | 19 | 168 | 24 | 176 | Transcription factor MYC3 |
4rru_A | 5e-13 | 19 | 168 | 63 | 215 | Transcription factor MYC3 |
4rs9_A | 4e-13 | 19 | 168 | 24 | 176 | Transcription factor MYC3 |
4ywc_A | 5e-13 | 19 | 168 | 63 | 215 | Transcription factor MYC3 |
4ywc_B | 5e-13 | 19 | 168 | 63 | 215 | Transcription factor MYC3 |
4yz6_A | 4e-13 | 19 | 168 | 24 | 176 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 467 | 474 | TKRSPQDM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015955534.1 | 0.0 | PREDICTED: transcription factor GLABRA 3 | ||||
Swissprot | Q9FN69 | 1e-155 | GL3_ARATH; Transcription factor GLABRA 3 | ||||
TrEMBL | A0A151TF17 | 0.0 | A0A151TF17_CAJCA; Transcription factor GLABRA 3 (Fragment) | ||||
STRING | GLYMA08G01810.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-156 | bHLH family protein |