PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QW16A
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 557aa    MW: 62787.5 Da    PI: 6.2155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QW16AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14403449455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h   ErrRR+++N++f +Lr+++P+      +K +K++iL  A+eY+++L+
  Aradu.QW16A 403 NHVLSERRRRAKLNERFLTLRSMVPSI-----TKDDKVSILDDAIEYLRKLE 449
                  78999*********************7.....6****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-467183IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85399448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-18402465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-14402453No hitNo description
Gene3DG3DSA:4.10.280.106.6E-18403465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-12403449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-14405454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MLTENFKEQL ALSVRSIQWS YAIFWSTSST QPGVLSWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELYKSLKTV EASPQTKRPS AALSPEDLTD TEWYYLVCMS FVFNIGQGLP  120
GKALAKGEPI WLCDAPSSDC RDFSRCLLAK TVVCFPFMDG VIELGTTDYA KDLSLIQQIR  180
TSFLDILDVG VHNVHGAFNA KQSQEVGGAL ISITSPNNSS NAFQANQPPD ETFMVERINN  240
GTSQVQSWQI MDDELSNAVH NSSDCVSQTL HSPENVASLP KGENLTDSAK DLQKCNNSKM  300
TLVDPRSDDW HYQMVLSTLL KSSDQLIMGM HFQNFHQESS FTSWKKAGSV SYQRPRTGGS  360
SQALLKKVLF EVPRMHLDGI LEYQEENDFK EAVRTEADEN GMNHVLSERR RRAKLNERFL  420
TLRSMVPSIT KDDKVSILDD AIEYLRKLEK RIKELEAHKD LTDREARTKR SPQDMVERTS  480
DNYFNKTDNG NKSMAKKRKS RDIDDTRPEI NSESLLKGSS TNDVAVNINE NNEVLTGPTI  540
VSAKRIKQTL QNVAFKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-131916824176Transcription factor MYC3
4rqw_B4e-131916824176Transcription factor MYC3
4rru_A5e-131916863215Transcription factor MYC3
4rs9_A4e-131916824176Transcription factor MYC3
4ywc_A5e-131916863215Transcription factor MYC3
4ywc_B5e-131916863215Transcription factor MYC3
4yz6_A4e-131916824176Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467474TKRSPQDM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955534.10.0PREDICTED: transcription factor GLABRA 3
SwissprotQ9FN691e-155GL3_ARATH; Transcription factor GLABRA 3
TrEMBLA0A151TF170.0A0A151TF17_CAJCA; Transcription factor GLABRA 3 (Fragment)
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-156bHLH family protein